TopoGSA - Network topological gene set analysis
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Upload your gene/protein set:
Species and identifier format:
-- Human --
Human -- ENSEMBL ID
Human -- HGNC SYMBOL
Human -- ENTREZ GENE
Human -- UNIPROT/SWISSPROT
Human -- REFSEQ DNA
Human -- PROTEIN ID
Human -- Affymetrix HC G110
Human -- Affymetrix HG Focus
Human -- Affymetrix HG U133 plus 2
Human -- Affymetrix HG U133a
Human -- Affymetrix HG U133a 2
Human -- Affymetrix HG U133b
Human -- Affymetrix HG U95a
Human -- Affymetrix HG U95av2
Human -- Affymetrix HG U95b
Human -- Affymetrix HG U95c
Human -- Affymetrix HG U95d
Human -- Affymetrix HG U95e
Human -- Affymetrix HuEx-1_0-st-v2
Human -- Affymetrix HuGene-1_0-st-v1
Human -- Affymetrix HuGene FL
Human -- Affymetrix U133 X3P
Human -- Agilent CGH 44b
Human -- Agilent Wholegenome
Human -- Illumina HumanWG-6 v1
Human -- Illumina HumanWG-6 v2
Human -- Illumina HumanWG-6 v3
-- Yeast --
Saccharomyces cerevisiae -- Gene Symbol
-- Fly --
Drosophila melanogaster -- FlyBase Symbol
-- Plant --
Arabidopsis thaliana -- Gene Symbol
-- Worm --
Caenorhabditis elegans -- Gene Symbol
Comparative analysis (optional):
No
-- Pathways and processes --
KEGG
BIOCARTA
Gene Ontology - biological process
-- Sequence-based functions --
INTERPRO
Gene Ontology - molecular function
-- Localization --
Gene Ontology - cellular component
-- For non-human species --
Gene Ontology
MetaCyc (only for non-human species)
Insert example data (optional):
Choose example:
Human cancer genes (Futreal et al., 2004)
Microarray, 1 class (Shipp et al., 2002)
Microarray, 2 classes (Shin et al., 2007)
Yeast, hyperosmotic response (source: geneontology.org)
Drosophila, putative cancer homologues (Fortini et al., 2000)
Apply bias reduction
(only for
human network, see
help
):
Please enter one gene/protein-identifier per line:
format help
OR
Please note
: For large gene sets the gene name normalization and network analysis can take a few minutes.
Recommended web-browsers and operating systems: Firefox 3.6, Internet Explorer 8 and Opera 10.50
(tested on current 32-bit Linux, Windows and Mac operating systems).
Customized analysis
: To use TopoGSA with your own interaction network, please
click here
.
